RnoEX0073063 @ rn6
Exon Skipping
Gene
ENSRNOG00000000795 | RT1-N3
Description
RT1 class Ib, locus N3 [Source:RGD Symbol;Acc:1598370]
Coordinates
chr20:3169093-3170181:+
Coord C1 exon
chr20:3169093-3169368
Coord A exon
chr20:3169546-3169659
Coord C2 exon
chr20:3170149-3170181
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCTTCCCTGCCCAGAGC
3' ss Score
10.46
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACCCGCCAAGGGCACATGTGACCCGGCACCCCAGACCTGAAAGTGATGTGACCCTGAGGTGCTGGGCCCTGGGTTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGACCTGATCCAAGAAATGGAGTTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTAGGGAAGGAGCAGAAGTACACATGCCTTGTGGAGCATGAGGGGCTGTCAGAGCCGCTCACCCTGAGATGGG
Seq A exon
AGCCTGCCCAGGACTCCACCACTACAATCATTCTAATTATTCTACCCACTGTCTCTGCAATTGCCCTCTGCGTTGCTGCTGTGGCAACTTGCATATGCCTGAAGAAGAAGGCAG
Seq C2 exon
GTGAAAGAGGAAGGCACGACACCCAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000795_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.750
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=89.2),PF139081=Shisa=PU(21.2=23.7)
A:
PF139081=Shisa=FE(36.5=100)
C2:
PF139081=Shisa=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCCCTGGGTTTCTACC
R:
CTGCTTCCTGGGTGTCGTG
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]