MmuEX0022961 @ mm10
Exon Skipping
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:119733784-119872272:+
Coord C1 exon
chr4:119733784-119733862
Coord A exon
chr4:119762220-119762348
Coord C2 exon
chr4:119872037-119872272
Length
129 bp
Sequences
Splice sites
3' ss Seq
TATTTTTGTATATTTCTCAGCAT
3' ss Score
5.55
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
CCTGGGGCTGTCAGTCGGCGCCCGCCGCCGCGGCTGCTCGCACGCCGGGCCTCTGGAGCAACCTCAGCGGAGCGCGCAG
Seq A exon
CATTGTGAACCACAGGAGAGCTGCCACCTACCTGCCTGGAGATTGGCTGGGGAGACTTCATGATGCATCCCCATTGATGAAATGGAAGGAGCTATCTGAGAGGAACTGGGGAGCGATGGAACAGATGGT
Seq C2 exon
TCTGGTGTCTCGGATTTGGCCCTGCGTTGCCCACTCCTGCTGCGTCTTGTCCAGCGAGGGACAAAACACCCTGCCACCTGCCTGAAGAACAGGAAGAAAAGAAGTTACAGAGGCAGATTCCAGTGCATCCAGAGACCGAGATGTTGACACTCAGAGGGAGCCGGGATCTCCAAGACATGTACTTCCAGAAGCCCCAGGAGAGCTGGACAAGAGGCACAGTGACCCAAGTAGTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCTGGAGCAACCTCAG
R:
GTCACTGTGCCTCTTGTCCAG
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types