MmuEX1014672 @ mm10
Exon Skipping
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:119814495-119997252:+
Coord C1 exon
chr4:119814495-119814790
Coord A exon
chr4:119872037-119872293
Coord C2 exon
chr4:119997174-119997252
Length
257 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCTGTCCCTCTCAGTCT
3' ss Score
9.56
5' ss Seq
TATGCTTAG
5' ss Score
-28.12
Exon sequences
Seq C1 exon
CTCACCACCAGCCGACTCTCCCATTATCCCCCTGCCTAGTTTGGTGCTCCAGTGTACATGAGTATTCCGTGTGCATATGTGTGTATACAAACACGCATGCACGCCTGGATGGACAGACATACGCACAGGTTATTTCTTAAGAGCAATTCCTTCAATAAGGTCTTTACCCCTTACTTGAAACAGGTGTTTATGAAAAAAAATGCACAATATCCCGACTGACCGGAATAATTGAAGAAGGGTGCTGGATCCGTGGGTCAGAGAACACACAGGACCAGCTTGCTACCCCAAGGCTGAAG
Seq A exon
TCTGGTGTCTCGGATTTGGCCCTGCGTTGCCCACTCCTGCTGCGTCTTGTCCAGCGAGGGACAAAACACCCTGCCACCTGCCTGAAGAACAGGAAGAAAAGAAGTTACAGAGGCAGATTCCAGTGCATCCAGAGACCGAGATGTTGACACTCAGAGGGAGCCGGGATCTCCAAGACATGTACTTCCAGAAGCCCCAGGAGAGCTGGACAAGAGGCACAGTGACCCAAGTAGTAGAAGTAAGTTCATTTCTCTGATAT
Seq C2 exon
GCCTCCCTCTGACACAGCCTTGAAGCTTTCAGAATCTCTGGCCTAGCTCCACCATGACATCACAGCTTGCTCCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634_MULTIEX1-4/4=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCCCATTATCCCCCTGC
R:
TTCAAGGCTGTGTCAGAGGGA
Band lengths:
306-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types