HsaEX6030327 @ hg19
Exon Skipping
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:13561]
Coordinates
chr1:42312862-42384169:-
Coord C1 exon
chr1:42384084-42384169
Coord A exon
chr1:42314542-42314760
Coord C2 exon
chr1:42312862-42314116
Length
219 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCTGTCCCTCTCAGTCT
3' ss Score
9.56
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CCTGCCTGGCCGGAATAATTCATGAAGAAGGGGCTGGATCCGTGGGTCAGAGAACACAGGACCAGTTTGCCATCCCAAGGCCGAAG
Seq A exon
TCTGGTGTCTCGGATTTGTTCCTGTGTTGCCCACTCCTGCTGGATCTTGTCCAGTCGAGGGACAAACGTCCTGAAGAATGGGAAGAAAGGAGGTTCTGAAGGCACAGATTCCAATACCATGCCAGAGGTTGAGGACACTGGTGCTTGAAGGGAAACTGGCACACTCTGGAGCCCCAAGAAGAGCTGGAGCTGGAGGCATGCGGCCCACGAAGGGTAGAA
Seq C2 exon
GTACCAGCCATGACCAAGAGCCCTTCACATCATCTGGCAATCCATCCAGAACCCACTGAATGGAGGACAGCACAGCGAGGTCTTTCTCATTTTGTAACTGCAAAAGCTGGAACAAGAGCCAGAGAAGCCAAAGAAGCAGTACAAGTCCAACAGCTTTTAGAATAACCCTGAGAAAATGGTTGAATTTTGACCAGTTTTGCAATTGGATACTATGAGAAGAGACCTTCCCTCCTGCACTGGATTTCATCATCATACCTGGAGGCCATTCCTCATGGGACTTTGGCCATCTCATATCCACCTTTAAGCATGTTATTCCCATTTCAGCTGTGGTAGCTCTGGGTATCCTTCCCTAGGAGAAAATATTAATCTTTTCTCCCTCTGAGTTCTGGATTAAACTGTCTTATCTGAAACTGGGTCACTTTAGGCTAGAAGCACCACTAGACATTCCTGTTCTCAGAAGTTGCCAAGTTCATGTCATATCTGTTTCATTGTTAACGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124-'1-9,'1-8,6-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGTGGGTCAGAGAACACA
R:
TGAAATCCAGTGCAGGAGGGA
Band lengths:
295-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)