HsaEX0030060 @ hg19
Exon Skipping
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:13561]
Coordinates
chr1:42314542-42501596:-
Coord C1 exon
chr1:42501478-42501596
Coord A exon
chr1:42384084-42384195
Coord C2 exon
chr1:42314542-42314760
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTACCCCTTACTTGAAACAGGTG
3' ss Score
7.48
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CCCGCCGCCGCGCCACGGCTCCTCGCATGCCGTGGCCCGGGTGGCTGCCAGCGCTGCCGCCCGCCGCCCGCCACCCCGGCATCCCAAGCCGCCTCCCGCCGCCCCGGCCCGGCGCGCAG
Seq A exon
GTGTTCATGAAAAAAATGCACAAAATCCTGCCTGGCCGGAATAATTCATGAAGAAGGGGCTGGATCCGTGGGTCAGAGAACACAGGACCAGTTTGCCATCCCAAGGCCGAAG
Seq C2 exon
TCTGGTGTCTCGGATTTGTTCCTGTGTTGCCCACTCCTGCTGGATCTTGTCCAGTCGAGGGACAAACGTCCTGAAGAATGGGAAGAAAGGAGGTTCTGAAGGCACAGATTCCAATACCATGCCAGAGGTTGAGGACACTGGTGCTTGAAGGGAAACTGGCACACTCTGGAGCCCCAAGAAGAGCTGGAGCTGGAGGCATGCGGCCCACGAAGGGTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124-'0-8,'0-2,1-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCCGGCATCCCAAG
R:
CATGCCTCCAGCTCCAGC
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)