MmuEX0022962 @ mm9
Exon Skipping
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:119406389-119669857:+
Coord C1 exon
chr4:119406389-119406467
Coord A exon
chr4:119487283-119487395
Coord C2 exon
chr4:119669779-119669857
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTACCCCTTACTTGAAACAGGTG
3' ss Score
7.48
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CCTGGGGCTGTCAGTCGGCGCCCGCCGCCGCGGCTGCTCGCACGCCGGGCCTCTGGAGCAACCTCAGCGGAGCGCGCAG
Seq A exon
GTGTTTATGAAAAAAAATGCACAATATCCCGACTGACCGGAATAATTGAAGAAGGGTGCTGGATCCGTGGGTCAGAGAACACACAGGACCAGCTTGCTACCCCAAGGCTGAAG
Seq C2 exon
GCCTCCCTCTGACACAGCCTTGAAGCTTTCAGAATCTCTGGCCTAGCTCCACCATGACATCACAGCTTGCTCCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGGCTGTCAGTCGG
R:
AAGGAGCAAGCTGTGATGTCA
Band lengths:
154-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: