MmuEX0022970 @ mm9
Exon Skipping
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:61821084-61842656:-
Coord C1 exon
chr10:61842563-61842656
Coord A exon
chr10:61827771-61827816
Coord C2 exon
chr10:61821084-61821178
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTTCTGTTCTCAGGAC
3' ss Score
12.26
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
ATTCTGTGACTGCAGGAGTCCCTGAAACACCTGGGACCATGGAGGGCCCCCCTCTTCTCAAGGCTTGCTAGGTTAGACCAGTAACTACATCAAG
Seq A exon
GACTCCAACCCACCAGCTAGAGACCGTTCCTCAGACACCTGAGAAG
Seq C2 exon
GATCAGAAAACCCCGCTTCTGAGGACAGAAGACCTCTGGAAAAACAGTGTAGCCATCACCTCTACACTATGGGACAGAACTGCCAGCGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012_MULTIEX2-3/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.701
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCTTCTCAAGGCTTGCT
R:
GCTGGCAGTTCTGTCCCATAG
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: