RnoEX0041995 @ rn6
Exon Skipping
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31994675-32014781:-
Coord C1 exon
chr20:32014681-32014781
Coord A exon
chr20:32002683-32002728
Coord C2 exon
chr20:31994675-31994775
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTTTCTGTTCTTAGGAC
3' ss Score
11.86
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
AGAACCCATTCCATGACTGCAGGAGTCCCTGAACCACCTGGGACCATGGAGGGTCCCCCTCTTCTCAAGGCTCGCTAGGCAAGACCAGTAACTACATCAAG
Seq A exon
GACTCCAACCCACCAGCTCAAGACTGTTCCTCAGACACCTGGGAAG
Seq C2 exon
GATCAGGAGACCCAGCTTCGGAGGACAGAAGACCCCTGGGAAAACAGCATAGCCAGAACCTCTACATTATGGGACAGAACTGCCAGCGAGGACAGGTAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTCCATGACTGCAGGAG
R:
GCTGTTTTCCCAGGGGTCTTC
Band lengths:
145-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]