MmuEX0023576 @ mm9
Exon Skipping
Gene
ENSMUSG00000025950 | Idh1
Description
isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
Coordinates
chr1:65221805-65233053:-
Coord C1 exon
chr1:65232879-65233053
Coord A exon
chr1:65226337-65226389
Coord C2 exon
chr1:65221805-65221942
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTATATCGTGTATCTCTAGTGC
3' ss Score
7.21
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGCCATCCTGAAGGAAGCGGGGAGGACGGTGCATGTGAGCATCACGCGCGCCAGGCATTAGACGCCAGCCAGTCGCTGTTACCGTATGTGTTCAACAACGTGAGCACATATAATTTAGGACCGCTCTCAGAGCTCTCTTGGACCGACTTCTACCTGTGTAGTCCAGAGTGAAGAG
Seq A exon
TGCAGCTTCATCGCAACCCAGAAAATAAACCTCACTGTCTTCCATGACAAATG
Seq C2 exon
GGTTATTGAAGTAAAAATGTCCAGAAAAATCCAAGGAGGTTCTGTGGTGGAGATGCAAGGAGATGAAATGACACGAATCATTTGGGAATTGATTAAGGAAAAACTTATTCTTCCCTATGTGGAACTGGATCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025950-'0-8,'0-3,2-8
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0018015=Iso_dh=PU(23.7=78.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAACAACGTGAGCACA
R:
GCATCTCCACCACAGAACCTC
Band lengths:
144-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: