MmuEX0023577 @ mm9
Exon Skipping
Gene
ENSMUSG00000025950 | Idh1
Description
isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
Coordinates
chr1:65221805-65226389:-
Coord C1 exon
chr1:65226337-65226389
Coord A exon
chr1:65225564-65225986
Coord C2 exon
chr1:65221805-65221942
Length
423 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTGTACCTTTTGCAGAGA
3' ss Score
9.25
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
TGCAGCTTCATCGCAACCCAGAAAATAAACCTCACTGTCTTCCATGACAAATG
Seq A exon
AGAACCTGGATACTCAACGCTGGGATTCCTAGATTGTTGCGGAGCCCAGAACACTCGGTCTCGGCGCTTCCGATAGCCTGTCAGTAGGTGGCGTCCTCGCTCCTCAACTGCAGGGTGTTCCCGAGGAATCTCCGCGGCGTGGCAGTCCCATCCCCCACCGGGAACAGCGGACCGCTGCATCCCAGACTTAATCTCAATCTATGCCTCGGCCCACCCCACAAAGTCGGAGGCGGCGAATGGCGTCGTGGAGGGGGCGGGGCTTCGGGAGGTGGGCTGAGGGGGTGGGGCCTGGGAGGAGACAAAGCCGGGAAGAGTTAAACAGCCTTGACCCTGCCGCTGGGCTTCCGAGCGAAGGTTGTGGCAGATGCTGATCTAACTGGGGCCGGCTTATTACAGCTTGTGTGTACGCGCGGGTGTGAGCCG
Seq C2 exon
GGTTATTGAAGTAAAAATGTCCAGAAAAATCCAAGGAGGTTCTGTGGTGGAGATGCAAGGAGATGAAATGACACGAATCATTTGGGAATTGATTAAGGAAAAACTTATTCTTCCCTATGTGGAACTGGATCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025950-'2-8,'2-4,3-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0018015=Iso_dh=PU(23.7=78.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTCATCGCAACCCAG
R:
CTATGCAGATCCAGTTCCACA
Band lengths:
190-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: