MmuEX0025071 @ mm9
Exon Skipping
Gene
ENSMUSG00000032034 | Kcnj5
Description
potassium inwardly-rectifying channel, subfamily J, member 5 [Source:MGI Symbol;Acc:MGI:104755]
Coordinates
chr9:32129666-32151822:-
Coord C1 exon
chr9:32151689-32151822
Coord A exon
chr9:32149807-32150109
Coord C2 exon
chr9:32129666-32130604
Length
303 bp
Sequences
Splice sites
3' ss Seq
CCGATATACTTATCTTACAGGGG
3' ss Score
7.69
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGGGCGTCTGCCCGTCCGTAGGCAATGCCTGAGGCTAGGGAATCCCCTGGAGAGCCCTGAGAGCCACCTGCACCGCCTTGGAAGGATCTCCAGAAGTTAGCCCCAAGGGTTCGGAGAAGCTCTCTGCGCTACAA
Seq A exon
GGGAAGGCTCAGCTTCCAGTGGGAGCCCTAGGGAACAGGGTGTACTTGGGAGCATGGCAGCATCAGATCACCACTGAAAGAGGTGCCATCCCAGAGATAACTTCATCCTCCAACAGCACCCAGCCATCTTCCCCACGCTGACCACCTAGCTGCCCAACAGCAAAAGCACCCACCACTCTGCCACCGCCTCTCCAAGATGGCTACCTACTGCTGGCCGGGCACTCTGAAACAGCACTTCTTGCTTAAGAGCACATCTGCTTTAAGCATAAAATGAGTGTGTTCTATGCTCCATCTAGCAAGCAG
Seq C2 exon
CTATGGCCGGTGATTCTAGGAATGCTATGAATCAAGACATGGAGATAGGAGTCACTTCCCAGGACCACAAGAAGATTCCCAAACAGGCTCGGGATTACATCCCCATTGCCACAGACCGCACCCGCCTGCTGACAGAAGGCAAGAAGCCACGCCAGCGCTACATGGAGAAGACTGGCAAGTGCAATGTACACCACGGCAATGTTCAGGAAACCTACCGCTACCTAAGTGACCTCTTCACCACCCTGGTGGACCTCAAATGGCGCTTCAACCTTCTGGTCTTCACCATGGTCTACACCATCACCTGGCTGTTCTTTGGCTTCATTTGGTGGCTCATTGCTTATGTCCGAGGTGATCTGGATCACGTGGGTGACCAAGAGTGGATCCCTTGTGTTGAAAACCTTAGCGGCTTTGTATCTGCTTTCCTGTTCTCCATCGAGACAGAAACAACCATTGGGTATGGCTTCAGAGTCATTACAGAGAAGTGTCCAGAAGGGATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032034_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=PU(77.3=82.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTAGCCCCAAGGGTTCGG
R:
GCCAAAGAACAGCCAGGTGAT
Band lengths:
358-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: