MmuEX0025071 @ mm10
Exon Skipping
Gene
ENSMUSG00000032034 | Kcnj5
Description
potassium inwardly-rectifying channel, subfamily J, member 5 [Source:MGI Symbol;Acc:MGI:104755]
Coordinates
chr9:32322081-32344350:-
Coord C1 exon
chr9:32344104-32344350
Coord A exon
chr9:32342222-32342524
Coord C2 exon
chr9:32322081-32323019
Length
303 bp
Sequences
Splice sites
3' ss Seq
CCGATATACTTATCTTACAGGGG
3' ss Score
7.69
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GACAGCAGAGAGCCTCCCGCTGTTCTCTCTAGATAGAAGGGCGAGGCAGACCGGTGAAGGGGCGGGAGGTTTAGACGCCTCTGCTAGCTGGACCTGCGACACCAGAGTGGCTCGGGGCGTCTGCCCGTCCGTAGGCAATGCCTGAGGCTAGGGAATCCCCTGGAGAGCCCTGAGAGCCACCTGCACCGCCTTGGAAGGATCTCCAGAAGTTAGCCCCAAGGGTTCGGAGAAGCTCTCTGCGCTACAA
Seq A exon
GGGAAGGCTCAGCTTCCAGTGGGAGCCCTAGGGAACAGGGTGTACTTGGGAGCATGGCAGCATCAGATCACCACTGAAAGAGGTGCCATCCCAGAGATAACTTCATCCTCCAACAGCACCCAGCCATCTTCCCCACGCTGACCACCTAGCTGCCCAACAGCAAAAGCACCCACCACTCTGCCACCGCCTCTCCAAGATGGCTACCTACTGCTGGCCGGGCACTCTGAAACAGCACTTCTTGCTTAAGAGCACATCTGCTTTAAGCATAAAATGAGTGTGTTCTATGCTCCATCTAGCAAGCAG
Seq C2 exon
CTATGGCCGGTGATTCTAGGAATGCTATGAATCAAGACATGGAGATAGGAGTCACTTCCCAGGACCACAAGAAGATTCCCAAACAGGCTCGGGATTACATCCCCATTGCCACAGACCGCACCCGCCTGCTGACAGAAGGCAAGAAGCCACGCCAGCGCTACATGGAGAAGACTGGCAAGTGCAATGTACACCACGGCAATGTTCAGGAAACCTACCGCTACCTAAGTGACCTCTTCACCACCCTGGTGGACCTCAAATGGCGCTTCAACCTTCTGGTCTTCACCATGGTCTACACCATCACCTGGCTGTTCTTTGGCTTCATTTGGTGGCTCATTGCTTATGTCCGAGGTGATCTGGATCACGTGGGTGACCAAGAGTGGATCCCTTGTGTTGAAAACCTTAGCGGCTTTGTATCTGCTTTCCTGTTCTCCATCGAGACAGAAACAACCATTGGGTATGGCTTCAGAGTCATTACAGAGAAGTGTCCAGAAGGGATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032034-'0-3,'0-0,3-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=PU(77.3=82.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTAGACGCCTCTGCTAGC
R:
GTCTTCTCCATGTAGCGCTGG
Band lengths:
352-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types