Special

MmuEX0025177 @ mm9

Exon Skipping

Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:142279578-142321950:+
Coord C1 exon
chr1:142279578-142279672
Coord A exon
chr1:142279837-142279911
Coord C2 exon
chr1:142321770-142321950
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAATGAAGTTTTTTTCTTAGTTT
3' ss Score
2.62
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AATGATCTCCATAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTTTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
Seq A exon
TTTTACAGACAAAACAAGAAAGCACATGTATCATGTGACTTTGGGATTTACTGAAACTTTGACATTTTCTCAAAG
Seq C2 exon
CATTTGTGGGATTCAGCATCTAGAACGAATTGGCAAGAAGCTCAATCTCTTTGACTCCCTTTATTTCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTCACTCCTGAAACATGGTCCTCCAAGCTCTTTGTCGTTGCTATGATCTGCGTTGCCCTTGTAGTACTCCCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0788511=Ion_trans_2=PU(16.7=43.8)

							
A:
PF0788511=Ion_trans_2=PU(15.7=50.0)

							
C2:
PF0788511=Ion_trans_2=FE(71.4=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000054623f4825A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000054623





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000112887, ENSMUSP00000113333, ENSMUSP00000113535, ENSMUSP00000113535f4824A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:196434178-196434251 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:6413983-6414060 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCCATTCAGCGTACACAGTCT

				
R: 
TCCCCAAAGCCCACAGTAGAA

				
Band lengths: 
182-257

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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