MmuEX0025177 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140383001-140425373:+
Coord C1 exon
chr1:140383001-140383095
Coord A exon
chr1:140383260-140383334
Coord C2 exon
chr1:140425193-140425373
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAATGAAGTTTTTTTCTTAGTTT
3' ss Score
2.62
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AATGATCTCCATAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTTTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
Seq A exon
TTTTACAGACAAAACAAGAAAGCACATGTATCATGTGACTTTGGGATTTACTGAAACTTTGACATTTTCTCAAAG
Seq C2 exon
CATTTGTGGGATTCAGCATCTAGAACGAATTGGCAAGAAGCTCAATCTCTTTGACTCCCTTTATTTCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTCACTCCTGAAACATGGTCCTCCAAGCTCTTTGTCGTTGCTATGATCTGCGTTGCCCTTGTAGTACTCCCTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=PU(16.7=43.8)
A:
PF0788511=Ion_trans_2=PU(15.7=50.0)
C2:
PF0788511=Ion_trans_2=FE(71.4=100)
Main Inclusion Isoform:
ENSMUST00000120796fB2117
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCAGCGTACACAGTCT
R:
TCCCCAAAGCCCACAGTAGAA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types