RnoEX0046243 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57266142-57308790:+
Coord C1 exon
chr13:57266142-57266236
Coord A exon
chr13:57266396-57266470
Coord C2 exon
chr13:57308610-57308790
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAAATGAATTTTTTTCTTAGTTT
3' ss Score
4.79
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AATGATCTTCATCGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTCTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
Seq A exon
TTTTACAGACAAAACAAGAGAGCACATGTATCATGTGACTTTGGGATTTACTGAAACTTTGACATTTTCTCAAAG
Seq C2 exon
CATTTGTGGAATTCAGCATCTGGAACGAATTGGAAAGAAACTCAATCTCTTTGACTCCCTTTATTTCTGCATTGTGACATTTTCTACTGTGGGCTTTGGGGATGTTACTCCTGAAACATGGTCCTCCAAGCTTTTTGTTGTTGCTATGATCTGCGTTGCTCTTGTAGTTCTCCCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=PU(16.7=43.8)
A:
PF0788511=Ion_trans_2=PU(15.7=50.0)
C2:
PF0788511=Ion_trans_2=FE(71.4=100)
Main Inclusion Isoform:
ENSRNOT00000017884fB7226
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCAGCGTACACAGTCT
R:
TCCCCAAAGCCCACAGTAGAA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]