MmuEX0026043 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12502934-12507034:+
Coord C1 exon
chr18:12502934-12503164
Coord A exon
chr18:12506722-12506816
Coord C2 exon
chr18:12506921-12507034
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTGCTATTTTCCAGTCC
3' ss Score
8.91
5' ss Seq
AAGGTTTCA
5' ss Score
-2.05
Exon sequences
Seq C1 exon
GGAAACTTCAGACACGAAGGCAGCAGTGCCCCAGTGTCCCGGGAGGAGCTGATGACTGTGCTGTCCAGACTGGAAAGACTCCACATCCGGGGCCTCCATTTCACCGAGACACAGCGGCTCACCTTGGGTGAGGTAGGGCTGGAGGAGGCCTCTGACACGGGAAGCGGACCCAGGGCTCATCTTGTGGAGATGTGTGCCTGCCCCCCTGACTACACAGGTGACTCATGCCAG
Seq A exon
TCCCACTGTCACAAAGATCCAGAACAACCTGACCAACAGCAACAGAGTCACTGGTACTTGGTATCAGAAATCCTTTCAAGACCTGGAGAGAGAAG
Seq C2 exon
GGTTGTCGCCCTGGATACTATTGGGACAACAAAAGCTTACCTGTAGGAAGGTGTGTTCCCTGCAATTGCAACGGACATTCAAATAGATGCCAGGATGGCTCCGGGATATGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=PD(45.6=80.5),PF0005319=Laminin_EGF=PU(45.7=20.8)
A:
NO
C2:
PF0005319=Laminin_EGF=PD(48.6=44.7),PF0005319=Laminin_EGF=PU(37.8=44.7)
Main Inclusion Isoform:
ENSMUST00000092070fB2198
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTAGGGCTGGAGGAG
R:
TGCAGGGAACACACCTTCCTA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types