MmuEX0026043 @ mm9
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12661443-12665543:+
Coord C1 exon
chr18:12661443-12661673
Coord A exon
chr18:12665231-12665325
Coord C2 exon
chr18:12665430-12665543
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTGCTATTTTCCAGTCC
3' ss Score
8.91
5' ss Seq
AAGGTTTCA
5' ss Score
-2.05
Exon sequences
Seq C1 exon
GGAAACTTCAGACACGAAGGCAGCAGTGCCCCAGTGTCCCGGGAGGAGCTGATGACTGTGCTGTCCAGACTGGAAAGACTCCACATCCGGGGCCTCCATTTCACCGAGACACAGCGGCTCACCTTGGGTGAGGTAGGGCTGGAGGAGGCCTCTGACACGGGAAGCGGACCCAGGGCTCATCTTGTGGAGATGTGTGCCTGCCCCCCTGACTACACAGGTGACTCATGCCAG
Seq A exon
TCCCACTGTCACAAAGATCCAGAACAACCTGACCAACAGCAACAGAGTCACTGGTACTTGGTATCAGAAATCCTTTCAAGACCTGGAGAGAGAAG
Seq C2 exon
GGTTGTCGCCCTGGATACTATTGGGACAACAAAAGCTTACCTGTAGGAAGGTGTGTTCCCTGCAATTGCAACGGACATTCAAATAGATGCCAGGATGGCTCCGGGATATGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'37-42,'37-41,40-42
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=PD(45.6=80.5),PF0005319=Laminin_EGF=PU(45.7=20.8)
A:
NO
C2:
PF0005319=Laminin_EGF=PD(48.6=44.7),PF0005319=Laminin_EGF=PU(37.8=44.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTAGGGCTGGAGGAG
R:
TGCAGGGAACACACCTTCCTA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: