MmuEX0026160 @ mm10
Exon Skipping
Gene
ENSMUSG00000008206 | Cers4
Description
ceramide synthase 4 [Source:MGI Symbol;Acc:MGI:1914510]
Coordinates
chr8:4521174-4523510:+
Coord C1 exon
chr8:4521174-4521280
Coord A exon
chr8:4521392-4521417
Coord C2 exon
chr8:4523354-4523510
Length
26 bp
Sequences
Splice sites
3' ss Seq
GTTGGCTGGGATTTTTGCAGAGC
3' ss Score
4.74
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGTTGTAAGATTCTCAACTATGCCCACTTTAGGCGAGGGTGCGATGCTCTCTTCATCATGTTTGCCTTAGTCTTCTTCTACACGCGCCTCATATTCTTCCCCACCCA
Seq A exon
AGCACAACATATGCAAAGGCACAGAG
Seq C2 exon
GGTCATCTACACGTCTGTGTATGACTCCATCAAGAACTCGGGCCCCTTCTTTGGCTACTACTTCTTTATTGTGCTCTTGGTGATGCTACAGATTCTTCATGTGTACTGGTTCTGCCTCATCCTGCGCATGCTCTACAGTTTCCTGCATAAGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008206-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(4.9=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
Main Inclusion Isoform:
ENSMUST00000008350fB2209
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCGATGCTCTCTTCATC
R:
GCCCGAGTTCTTGATGGAGTC
Band lengths:
114-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types