MmuEX0026160 @ mm9
Exon Skipping
Gene
ENSMUSG00000008206 | Lass4
Description
LAG1 homolog, ceramide synthase 4 [Source:MGI Symbol;Acc:MGI:1914510]
Coordinates
chr8:4521174-4523510:+
Coord C1 exon
chr8:4521174-4521280
Coord A exon
chr8:4521360-4521417
Coord C2 exon
chr8:4523354-4523510
Length
58 bp
Sequences
Splice sites
3' ss Seq
CCCTTGGTGCCCTACCTCAGTGA
3' ss Score
5.28
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGTTGTAAGATTCTCAACTATGCCCACTTTAGGCGAGGGTGCGATGCTCTCTTCATCATGTTTGCCTTAGTCTTCTTCTACACGCGCCTCATATTCTTCCCCACCCA
Seq A exon
TGAACTGGAGGTGTTGGCTGGGATTTTTGCAGAGCACAACATATGCAAAGGCACAGAG
Seq C2 exon
GGTCATCTACACGTCTGTGTATGACTCCATCAAGAACTCGGGCCCCTTCTTTGGCTACTACTTCTTTATTGTGCTCTTGGTGATGCTACAGATTCTTCATGTGTACTGGTTCTGCCTCATCCTGCGCATGCTCTACAGTTTCCTGCATAAGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008206-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
A:
PF0379811=TRAM_LAG1_CLN8=PD(7.3=60.0)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCTCATATTCTTCCCCAC
R:
AGGATGAGGCAGAACCAGTACA
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: