MmuEX0026224 @ mm10
Exon Skipping
Gene
ENSMUSG00000062061 | Obp2a
Description
odorant binding protein 2A [Source:MGI Symbol;Acc:MGI:2387617]
Coordinates
chr2:25702177-25703326:+
Coord C1 exon
chr2:25702177-25702278
Coord A exon
chr2:25702730-25702753
Coord C2 exon
chr2:25703163-25703326
Length
24 bp
Sequences
Splice sites
3' ss Seq
GCTTCTTTTTGTTTCTACAGATA
3' ss Score
10.64
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAGAGACTCTGGTGAAAATCCAGAGGCCATGGAAGAATTTAAGAATTTCATAAAGCGCATGAATCTCCGACTGGAAAACATGTTTGTGCCAGAGATCGGAG
Seq A exon
ATAAATGTGTTGAAAGTGACTAGG
Seq C2 exon
CAGCTACCCAGGTCTGCAACAGCTGAGCCAGCCTTGCTTCCAACACCAAGCTGGGACATCCCTTCACCACACCTCTCCTGGACCAAACTTCCCACTGCTTCACCACCACCACCTCAGTACCTGCTCCCCTCTCCCCTGACTCCAAATAAATCTCTTTAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062061-'7-5,'7-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(24.3=100)
A:
PF0006118=Lipocalin=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGCATGAATCTCCGACTG
R:
GATGTCCCAGCTTGGTGTTGG
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types