RnoEX0061967 @ rn6
Exon Skipping
Gene
ENSRNOG00000042407 | Obp2a
Description
odorant binding protein 2A [Source:RGD Symbol;Acc:1588212]
Coordinates
chr3:2912187-2913362:+
Coord C1 exon
chr3:2912187-2912288
Coord A exon
chr3:2912757-2912783
Coord C2 exon
chr3:2913198-2913362
Length
27 bp
Sequences
Splice sites
3' ss Seq
GCTTCTTTTGGTTTCTACAGATG
3' ss Score
9.94
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAGAAACCCTGAGGAAAACCCGGAGGCTATGGAAGAATTTAAGAAATTCATACAGCGCATGGAACTCCAAGAGGAAAACATGTTTGTGCCAGAGATCAGAG
Seq A exon
ATGAGTGTGTTAATGAAAGTGACTAGG
Seq C2 exon
CAGCTACCCAGGTTTGCAACAGCTGAGCCAGCCTTGCTTTCACACCAGGCTGGGACGGACATCCCGGCACCACACCTCTCCTGGACCAAGCTTCCCACTGCCTCGCCCCAACCCCCATCTCAGTACCTGCTCCCCTCCCCAACTCCAAATAAAGCTTTCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042407-'5-7,'5-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.314 A=0.125 C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(24.5=100)
A:
PF0006118=Lipocalin=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCCTGAGGAAAACCCGG
R:
TGTTGCAAACCTGGGTAGCTG
Band lengths:
120-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]