MmuEX0027260 @ mm9
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:86131192-86132672:-
Coord C1 exon
chr12:86132547-86132672
Coord A exon
chr12:86131945-86132067
Coord C2 exon
chr12:86131192-86131323
Length
123 bp
Sequences
Splice sites
3' ss Seq
CATGGGCATCTCTATCCTAGATG
3' ss Score
7.86
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACGTGAATGAGTGTGTTGGGGAAGAGCATTGTGCTCCTCACGGCGAGTGCCTCAACAGCCTGGGCTCCTTCTTCTGCCTCTGTGCACCCGGCTTTGCTAGTGCTGAGGGGGGCACCAGATGCCAGG
Seq A exon
ATGTTGATGAATGTGCAGCCACAGACCCGTGTCCGGGAGGACACTGTGTCAACACAGAGGGCTCCTTCAGCTGTCTGTGTGAGACTGGCTTCCAGCCCTCCCCAGACAGCGGAGAATGTTTGG
Seq C2 exon
ATATTGATGAGTGTGAGGACCGTGAAGACCCGGTGTGCGGAGCCTGGAGGTGTGAGAACAGTCCTGGTTCCTACCGCTGCATCCTGGACTGCCAGCCTGGCTTCTATGTGGCGCCAAATGGAGACTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'30-29,'30-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAATGAGTGTGTTGGGG
R:
GTCTCCATTTGGCGCCACATA
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: