MmuEX0027268 @ mm10
Exon Skipping
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5756794-5757472:+
Coord C1 exon
chr19:5756794-5756931
Coord A exon
chr19:5757035-5757175
Coord C2 exon
chr19:5757311-5757472
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATCCCCTCGATGTCCCATAGACG
3' ss Score
6.45
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG
Seq A exon
ACGTGGATGAGTGCCAGGATCCGGCTGCTTGCCGCCCTGGCCGCTGCGTCAACCTCCCGGGCTCCTACCGCTGCGAGTGTCACCCGCCCTGGGAGCCCGGGCCCTCCGGCCGCGACTGCCAGCTCCCCGAGAGCCAGGCGG
Seq C2 exon
AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.032 A=0.188 C2=0.045
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=85.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=83.3)
C2:
PF0068312=TB=PU(92.5=67.3)
Main Inclusion Isoform:
ENSMUST00000081496fB2308
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGATGAGTGCTTGGATG
R:
GGCAGCAGCAGTCATCAAAAG
Band lengths:
246-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types