MmuEX0027476 @ mm10
Exon Skipping
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123465356-123469872:-
Coord C1 exon
chr4:123469723-123469872
Coord A exon
chr4:123465859-123466074
Coord C2 exon
chr4:123465356-123465505
Length
216 bp
Sequences
Splice sites
3' ss Seq
ACTTTACTCTGTTTCCTCAGGAA
3' ss Score
9.87
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
AATGTGTTTACTCGGAGACTTTGTTTAGAACATGATGAGAAATTGGTCTCCTATCTGTCTCTGTTACGGGACATTGAAATGAGAACCAAACAGATTCAACCTTTGGAGCTTAATGTGGCAGAGCTGCAAGATCTACTGGGTCAGGCAAAG
Seq A exon
GAACTTGACAGGGAATTAAAAGATCTGTCCACTGTGGTGAGTCAGGAATTGGAGTGTGTGGATCGGATTGTTATCAGTCAGCCACAAGAAGTTCCTGCTCAGCTGTTGAAGGCATTAGAGAAAGATGCCAAAAATCTTCAGAAGTCTCTAGACTCTGTTAGTGACTCTTGGAGTTCCAGATTCCTCCACCTCCAGAGTGCTGTGGAAGTAAAAAAG
Seq C2 exon
GCCACAGTGTTAAATCGGCACAAGGAACTGCAAGGCAAACTTCAAGATCTGAGAGCCTGGGTCGGCAGAGCCAGTCTTACTCTGAACAGCAAGGGCTGTGACACTGAAACTGACGCTGACAGCCTGAGTCACACTCTCCAACCATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-'75-72,'75-71,76-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.380
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTACTCGGAGACTTTGT
R:
TGTATGGTTGGAGAGTGTGACT
Band lengths:
296-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types