MmuEX0027911 @ mm9
Exon Skipping
Gene
ENSMUSG00000078627 | March10
Description
membrane-associated ring finger (C3HC4) 10 [Source:MGI Symbol;Acc:MGI:2443469]
Coordinates
chr11:105315578-105318049:-
Coord C1 exon
chr11:105317788-105318049
Coord A exon
chr11:105316442-105316608
Coord C2 exon
chr11:105315578-105315659
Length
167 bp
Sequences
Splice sites
3' ss Seq
GGCAGAATCACTCGCTTCCTCTC
3' ss Score
-16.86
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTTGCCAAGGAAACGGGAGGACGCCAGGCAGCCGCCCCCACCGTCTCCACCCCAAGAAAGGCCGGAGGCCGCGGCGGACAGCTGCCTCCCGGGAGGAGAAGGAAGAGGGCCCTCTAGAAGGAGGGAAGACAGTGAGGTGTGGGGGAGGAAGAGGAGCCCAGGACCGGCCCCACGCACGATTGATGGGCGGCTCTTCGCCCACCCGCTCCGCCCCGCGGCCCCTTTAGCCCCTTGTGAGGGGTGAAAGTGCTGATCCCCAAG
Seq A exon
CTCCCCACCTCACACACCTCCTCATCCCTGGCCCTTTCCCTCTCCTTAGCATGGCATCGCACACCAATTTCTAAAACACAAACTTGATCCAGTGCTTTGTCACCAGAAGCTTGCAACAAACATACACATGATCATGCGTGATTTTCAGAACGAGAAGCAATTCAAAG
Seq C2 exon
GAGCAGCAGGGGATCCATCTTTCTGTTTTTAACCCCATCGTTTTTTTTCTGAAAAAGGGGGAACAGACTTCATTCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078627-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTCTCCACCCCAAGAAAG
R:
GAAAGATGGATCCCCTGCTGC
Band lengths:
245-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: