MmuEX0027912 @ mm9
Exon Skipping
Gene
ENSMUSG00000078627 | March10
Description
membrane-associated ring finger (C3HC4) 10 [Source:MGI Symbol;Acc:MGI:2443469]
Coordinates
chr11:105312390-105316608:-
Coord C1 exon
chr11:105316442-105316608
Coord A exon
chr11:105315578-105315659
Coord C2 exon
chr11:105312390-105312496
Length
82 bp
Sequences
Splice sites
3' ss Seq
CAGGCTTCTCTCCCCAACAGGAG
3' ss Score
9.3
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTCCCCACCTCACACACCTCCTCATCCCTGGCCCTTTCCCTCTCCTTAGCATGGCATCGCACACCAATTTCTAAAACACAAACTTGATCCAGTGCTTTGTCACCAGAAGCTTGCAACAAACATACACATGATCATGCGTGATTTTCAGAACGAGAAGCAATTCAAAG
Seq A exon
GAGCAGCAGGGGATCCATCTTTCTGTTTTTAACCCCATCGTTTTTTTTCTGAAAAAGGGGGAACAGACTTCATTCTATGCAG
Seq C2 exon
ATCAGGAACTAAGAACCATGTTGCATGAAACAAGGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATCTACGGGATATGCAGCATAAGGTGGACTCAGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078627-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.633
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCGCACACCAATTTCT
R:
CTGACGAACTTCTGCCTGTCC
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: