MmuEX0027912 @ mm10
Exon Skipping
Gene
ENSMUSG00000078627 | March10
Description
membrane-associated ring finger (C3HC4) 10 [Source:MGI Symbol;Acc:MGI:2443469]
Coordinates
chr11:105451076-105456735:-
Coord C1 exon
chr11:105456474-105456735
Coord A exon
chr11:105454264-105454345
Coord C2 exon
chr11:105451076-105451182
Length
82 bp
Sequences
Splice sites
3' ss Seq
CAGGCTTCTCTCCCCAACAGGAG
3' ss Score
9.3
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GGTTGCCAAGGAAACGGGAGGACGCCAGGCAGCCGCCCCCACCGTCTCCACCCCAAGAAAGGCCGGAGGCCGCGGCGGACAGCTGCCTCCCGGGAGGAGAAGGAAGAGGGCCCTCTAGAAGGAGGGAAGACAGTGAGGTGTGGGGGAGGAAGAGGAGCCCAGGACCGGCCCCACGCACGATTGATGGGCGGCTCTTCGCCCACCCGCTCCGCCCCGCGGCCCCTTTAGCCCCTTGTGAGGGGTGAAAGTGCTGATCCCCAAG
Seq A exon
GAGCAGCAGGGGATCCATCTTTCTGTTTTTAACCCCATCGTTTTTTTTCTGAAAAAGGGGGAACAGACTTCATTCTATGCAG
Seq C2 exon
ATCAGGAACTAAGAACCATGTTGCATGAAACAAGGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATCTACGGGATATGCAGCATAAGGTGGACTCAGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078627_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.672
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAGACAGTGAGGTGTGG
R:
GCCTGTCCCTTGTTTCATGCA
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types