RnoEX0052695 @ rn6
Exon Skipping
Gene
ENSRNOG00000007084 | March10
Description
membrane associated ring-CH-type finger 10 [Source:RGD Symbol;Acc:1311692]
Coordinates
chr10:93675902-93681263:-
Coord C1 exon
chr10:93681163-93681263
Coord A exon
chr10:93678963-93679044
Coord C2 exon
chr10:93675902-93676008
Length
82 bp
Sequences
Splice sites
3' ss Seq
GACAGGCTTCTCTTCCACAGGAG
3' ss Score
7.97
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CGCACGATTGATGGGCGGCTCTTCTGCTGTGGGCCTACCCACCCGCTCCGCCACGCAGTCCCTTTAGCCCCTAGTGAGGGGCGAAAGTGCTGATCCCCAAG
Seq A exon
GAGCAGCAGGGGGTCCATCTTTCTGTTTTTAACCACATCGTTTTTTTCTGAAAAAAGGGGGAACAGACTTCATTCTATGCAG
Seq C2 exon
ATCAGGAACTAAGAACCATGTTGCATGAAGCAAGGGACAGGCAGAAGTTCGTCAGCGACGTTCAGTATCTACGGGACATGCAGCATAAGGTGGACTCAGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007084-'0-9,'0-3,3-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.639
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGATGGGCGGCTCTTCTG
R:
CCCGTAGATACTGAACGTCGC
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]