Special

MmuEX0028095 @ mm9

Exon Skipping

Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60399516-60407816:+
Coord C1 exon
chr3:60399516-60399686
Coord A exon
chr3:60400641-60400751
Coord C2 exon
chr3:60407616-60407816
Length
111 bp
Sequences
Splice sites
3' ss Seq
TAATTATTATTCTCTCTTAGAAC
3' ss Score
7.57
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTCGTTGCTCCAGAGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTAGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAATGCCATGATGCCCGGTGCCCCGTTGCAGCCCGTG
Seq A exon
AACATAATGCAACAATCATTCCAAAAAAGAGGGGGGGATTGCATTTCGAGGTGGGAGGGATCCCCATATTACACCGGCAGTGATACCATTTATCAATACTGTACAGTCGAG
Seq C2 exon
CCAATGTTTTCAGTTGCACCAAGCTTAGCCACCAGTGCATCAGCAGCCTTTAACCCTTACCTGGGGCCTGTTTCCCCAAGCCTGGTTCCAGCAGAGATCTTGCCGACTGCACCAATGTTGGTCACGGGGAATCCTGGAGTTCCAGTGCCAGCAGCTGCCGCAGCTGCTGCACAGAAGTTAATGCGGACAGACAGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





Show structural model

		

			
Features


			

				
Disorder rate (disopred):
  C1=0.613 A=1.000 C2=0.728
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000029327f2177A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000029327f2175A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000029327, ENSMUSP00000029327f2176A, ENSMUSP00000076247, ENSMUSP00000096686, ENSMUSP00000126717, ENSMUSP00000127184
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:152133954-152134063 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr1:116275987-116276097 
LOW PSI
BtaEX0021568
(MBNL1)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr9:24970871-24970975 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCTTCATCCACCCCCACACTT

				
R: 
GGCAAGATCTCTGCTGGAACC

				
Band lengths: 
246-357

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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