BtaEX0021568 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116265609-116277314:-
Coord C1 exon
chr1:116277144-116277314
Coord A exon
chr1:116275987-116276097
Coord C2 exon
chr1:116265609-116265809
Length
111 bp
Sequences
Splice sites
3' ss Seq
TAATTATTATTCTCTCTTAGAAC
3' ss Score
7.57
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTCGTTGCTCCAGGGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTGGAGATAAATGGGCGCAATAACTTGATTCAGCAGAAGAACATGGCCATGTTGGCCCAGCAAATGCAACTAGCCAATGCCATGATGCCTGGTGCCCCATTACAACCCGTG
Seq A exon
AACTTAATGAACCAATCATTCCAAAAAAGAGGGGGGGATTGCATTTCGAGGTGGGAGGGATCTCCAAATCCAATCGGCAGTGATACCAATTATCAATACTATACAGTTGAG
Seq C2 exon
CCAATGTTTTCAGTTGCACCAAGCTTAGCTACCAATGCATCAGCAGCCTTTAATCCCTACCTGGGACCTGTTTCCCCAAGCCTGGTTCCAGCAGAGATCTTACCGACTGCACCAATGTTGGTTACAGGGAACCCTGGGGTCCCTGTACCTGCAGCTGCTGCAGCTGCTGCACAGAAATTAATGCGGACAGACAGACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564_MULTIEX1-6/13=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.095 A=1.000 C2=0.791
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Inclusion Isoform:
ENSBTAT00000005998fB4132
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATCCACCCCCACACTT
R:
AGATCTCTGCTGGAACCAGGC
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development