RnoEX0053011 @ rn6
Exon Skipping
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150838385-150846727:+
Coord C1 exon
chr2:150838385-150838555
Coord A exon
chr2:150839396-150839506
Coord C2 exon
chr2:150846527-150846727
Length
111 bp
Sequences
Splice sites
3' ss Seq
TAATTATCATTCTCTCTTAGAAC
3' ss Score
7.25
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTCGTTGCTCCAGAGAAAACTGCAAATATCTTCATCCACCCCCTCATTTAAAAACACAATTGGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAACGCCATGATGCCCGGTGCCCCACTGCAGCCCGTG
Seq A exon
AACTTAATGCAACAATCATTCCAAAAAAGAGGGGGGGATTGCATTTCGAGGTGGGAGGGATCCCCATATTACACCGGCAGTGATACCAATTATCAATACTGTACAGTCGAG
Seq C2 exon
CCAATGTTTTCAGTTGCACCAAGCTTAGCCACCAATGCATCAGCAGCCTTTAATCCCTACCTGGGGCCTGTTTCCCCAAGCCTGGTTCCAGCAGAGATCTTGCCGACTGCACCAATGTTGGTCACGGGGAATCCTGGAGTTCCGGTGCCAGCAGCTGCTGCAGCTGCTGCACAGAAGTTAATGCGGACAGACAGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076_MULTIEX1-4/11=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCAGTTAGCCAACGCC
R:
TCCAGTCTGTCTGTCCGCATT
Band lengths:
251-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]