MmuEX0028096 @ mm9
Exon Skipping
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60277032-60399686:+
Coord C1 exon
chr3:60277032-60277095
Coord A exon
chr3:60304903-60305016
Coord C2 exon
chr3:60399516-60399686
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCCGCCCTTCGCCTTCCAGGTT
3' ss Score
12.35
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTCTGAGGTGGTCGTTCATCAGCAACGGAGCAGATAGACAGGCAGCTATAAACAGGGCCCAGAG
Seq A exon
GTTCCAGGCGATGCGCTGCTTCTGCTGCTGCAGGCCGGGCAGCTAACTCTAACCTTCCGTCTAACCTTGCGGGCCTCGCGGGCTGGGCGCGGAGCCCCGGGAGCTGGAGCGGCG
Seq C2 exon
GGTCGTTGCTCCAGAGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTAGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAATGCCATGATGCCCGGTGCCCCGTTGCAGCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.613
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGAGGTGGTCGTTCATCA
R:
CACCGGGCATCATGGCATT
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types