MmuEX0028092 @ mm9
Exon Skipping
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60305174-60399686:+
Coord C1 exon
chr3:60305174-60305345
Coord A exon
chr3:60332678-60332900
Coord C2 exon
chr3:60399516-60399686
Length
223 bp
Sequences
Splice sites
3' ss Seq
CCTATCTCTTTTCTCTACAGGTT
3' ss Score
12.47
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GGCGACATGCCACAGTCTCTCGCCGCAGCCCGTCGAGTCGGGGCGCTCGCCATGCTCCCGTGACCCGGACCCGGCCAGTTCCCTTTCCCGTGGCGGGCATCCCGGAGTCGCGATCCCACAATGCCCCGGGCAGTCGGGGCCCCGGCGGGCAGCCTGCACGGCCACGTGAGAG
Seq A exon
GTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGAACCGCTTCTAGAGCAGCCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGACGACAGCACATCCGCCCTCCACCTCTAGCCCAGACACCCCATTTCTACTTCTAATCAGGAGAAAAGCTCTGAGTATCTGCCATTGCCCTAGGCTGCTTTAGTTTAGAAGAAAAGTTTGCTGAAAAA
Seq C2 exon
GGTCGTTGCTCCAGAGAGAACTGCAAATATCTTCATCCACCCCCACACTTAAAAACACAGTTAGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAATGCCATGATGCCCGGTGCCCCGTTGCAGCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763-'2-7,'2-4,4-7
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (disopred):
C1=NA A=0.160 C2=0.613
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGCCACAGTCTCTCGC
R:
TAACTGCATTTGCTGGGCCAG
Band lengths:
301-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types