MmuEX0028545 @ mm10
Exon Skipping
Gene
ENSMUSG00000026799 | Med27
Description
mediator complex subunit 27 [Source:MGI Symbol;Acc:MGI:1916225]
Coordinates
chr2:29349846-29413518:+
Coord C1 exon
chr2:29349846-29349990
Coord A exon
chr2:29379934-29380004
Coord C2 exon
chr2:29413388-29413518
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTCTCTCTTCCAGGAC
3' ss Score
13.97
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
TGAACTGGAACGTTTGAGCAACCTGGTAGGCAAGCCGTCTGAGAACCACCCTCTTCATAACAGTGGGCTGCTAAGCCTGGATCCTGTGCAGGACAAAACCCCACTCTACAGCCAGCTTCTGCAAGCATACAAATGGTCCAACAAG
Seq A exon
GACTTAAACAAGCTTTTTATAAGAGCCCAGATTGCTACCTAATTGCAAAGTTGTCAGCTGAATCAAGAGGG
Seq C2 exon
CTGCAGTACCATGCAGGTCTAGCGTCTGGCCTTTTGAACCAACAGTCCTTGAAGCGCTCTGCAAATCAGATGGGTGTGTCTGCCAAGCGGAGACCGAAGGCCCAGCCCACCACTCTGGTTCTACCACCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026799_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.000 C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGCAAGCCGTCTGAGAAC
R:
AGAGCGCTTCAAGGACTGTTG
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types