MmuEX0028546 @ mm10
Exon Skipping
Gene
ENSMUSG00000026799 | Med27
Description
mediator complex subunit 27 [Source:MGI Symbol;Acc:MGI:1916225]
Coordinates
chr2:29349846-29413518:+
Coord C1 exon
chr2:29349846-29349990
Coord A exon
chr2:29389813-29389873
Coord C2 exon
chr2:29413388-29413518
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCCTCTTTCCCTAGCAC
3' ss Score
10.39
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGAACTGGAACGTTTGAGCAACCTGGTAGGCAAGCCGTCTGAGAACCACCCTCTTCATAACAGTGGGCTGCTAAGCCTGGATCCTGTGCAGGACAAAACCCCACTCTACAGCCAGCTTCTGCAAGCATACAAATGGTCCAACAAG
Seq A exon
CACACAGCCATCATTCTGGCTCTCTTCACATGCCGCTCCCTCTGCCTGCCGTGAATTTATG
Seq C2 exon
CTGCAGTACCATGCAGGTCTAGCGTCTGGCCTTTTGAACCAACAGTCCTTGAAGCGCTCTGCAAATCAGATGGGTGTGTCTGCCAAGCGGAGACCGAAGGCCCAGCCCACCACTCTGGTTCTACCACCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026799_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.000 C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGCCTGGATCCTGTGCAG
R:
ATTTGCAGAGCGCTTCAAGGA
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types