MmuEX0028546 @ mm9
Exon Skipping
Gene
ENSMUSG00000026799 | Med27
Description
mediator complex subunit 27 [Source:MGI Symbol;Acc:MGI:1916225]
Coordinates
chr2:29205366-29269038:+
Coord C1 exon
chr2:29205366-29205510
Coord A exon
chr2:29245333-29245393
Coord C2 exon
chr2:29268908-29269038
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCCTCTTTCCCTAGCAC
3' ss Score
10.39
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGAACTGGAACGTTTGAGCAACCTGGTAGGCAAGCCGTCTGAGAACCACCCTCTTCATAACAGTGGGCTGCTAAGCCTGGATCCTGTGCAGGACAAAACCCCACTCTACAGCCAGCTTCTGCAAGCATACAAATGGTCCAACAAG
Seq A exon
CACACAGCCATCATTCTGGCTCTCTTCACATGCCGCTCCCTCTGCCTGCCGTGAATTTATG
Seq C2 exon
CTGCAGTACCATGCAGGTCTAGCGTCTGGCCTTTTGAACCAACAGTCCTTGAAGCGCTCTGCAAATCAGATGGGTGTGTCTGCCAAGCGGAGACCGAAGGCCCAGCCCACCACTCTGGTTCTACCACCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026799_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.000 C2=0.366
Domain overlap (PFAM):
C1:
PF091265=NaeI=PD(0.1=0.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGCCTGGATCCTGTGCAG
R:
ATTTGCAGAGCGCTTCAAGGA
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: