MmuEX0028730 @ mm9
Exon Skipping
Gene
ENSMUSG00000026857 | Mettl11a
Description
methyltransferase like 11A [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30663346-30675352:+
Coord C1 exon
chr2:30663346-30663603
Coord A exon
chr2:30663843-30663885
Coord C2 exon
chr2:30675149-30675352
Length
43 bp
Sequences
Splice sites
3' ss Seq
GCCCGTACATCACTTTCCAGTCC
3' ss Score
5.68
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGCGATCTGGCCCTGGGGAGGGGCTATCTGTCTGTGGAGAGGGATGAGCTAGTCTTGGGGCGGAGTGAACTGGCCTCGGGGCGGAGCGATCTTGAGTCCAGCCCCCTCCAGGCTCGGGGAAGTGACGTGTGCGGACAAAGGCAGAGGCCGCGAGGTGTCTGGTCCGGTAGAGTGGTGGCGGCTGCTGTGGGCTACGGTCTTTGCCAGCCTCCTTCTCAACCCGTCCTTTTCTCTCGGGTCCCTGGAGCCCCGACCCAG
Seq A exon
TCCTCAGTTTCCCCTCTGAGATAAGGAAAGCAGCCACTGCAAG
Seq C2 exon
GGGAGCAGCGCGGTGGCTGGCGACTTCACGGCTGGTGACGTCATGACGAGCGAGGTGATTGAGGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATCCCACCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857_MULTIEX1-1/3=C1-C2
Average complexity
ME(1-3[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCTCGGGTCCCTGGAG
R:
CTGCTTCCAGTAGGTCTTGGC
Band lengths:
140-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: