MmuEX0028730 @ mm10
Exon Skipping
Gene
ENSMUSG00000026857 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30807826-30819832:+
Coord C1 exon
chr2:30807826-30808083
Coord A exon
chr2:30808323-30808365
Coord C2 exon
chr2:30819629-30819832
Length
43 bp
Sequences
Splice sites
3' ss Seq
GCCCGTACATCACTTTCCAGTCC
3' ss Score
5.68
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGCGATCTGGCCCTGGGGAGGGGCTATCTGTCTGTGGAGAGGGATGAGCTAGTCTTGGGGCGGAGTGAACTGGCCTCGGGGCGGAGCGATCTTGAGTCCAGCCCCCTCCAGGCTCGGGGAAGTGACGTGTGCGGACAAAGGCAGAGGCCGCGAGGTGTCTGGTCCGGTAGAGTGGTGGCGGCTGCTGTGGGCTACGGTCTTTGCCAGCCTCCTTCTCAACCCGTCCTTTTCTCTCGGGTCCCTGGAGCCCCGACCCAG
Seq A exon
TCCTCAGTTTCCCCTCTGAGATAAGGAAAGCAGCCACTGCAAG
Seq C2 exon
GGGAGCAGCGCGGTGGCTGGCGACTTCACGGCTGGTGACGTCATGACGAGCGAGGTGATTGAGGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATCCCACCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857_MULTIEX1-1/6=C1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.028
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCTCGGGTCCCTGGAG
R:
CTGCTTCCAGTAGGTCTTGGC
Band lengths:
140-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types