MmuEX0028732 @ mm10
Exon Skipping
Gene
ENSMUSG00000026857 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1913867]
Coordinates
chr2:30807826-30819832:+
Coord C1 exon
chr2:30807826-30808083
Coord A exon
chr2:30815359-30815498
Coord C2 exon
chr2:30819629-30819832
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTCGCTCTCTTTAGGAT
3' ss Score
12.93
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GGCGATCTGGCCCTGGGGAGGGGCTATCTGTCTGTGGAGAGGGATGAGCTAGTCTTGGGGCGGAGTGAACTGGCCTCGGGGCGGAGCGATCTTGAGTCCAGCCCCCTCCAGGCTCGGGGAAGTGACGTGTGCGGACAAAGGCAGAGGCCGCGAGGTGTCTGGTCCGGTAGAGTGGTGGCGGCTGCTGTGGGCTACGGTCTTTGCCAGCCTCCTTCTCAACCCGTCCTTTTCTCTCGGGTCCCTGGAGCCCCGACCCAG
Seq A exon
GATTTAGAATTCCCCCTGTACTTGAGGACTAACTCCTTTTGAAGTTATGTGCGCCAGGCCCCCACCTCTGCCACCTGATGAAAGGCAGCAGTCCTAGCTGAAGTTGATCATGAGTTTCCTCCCTCCAAGCCTTATTCCAG
Seq C2 exon
GGGAGCAGCGCGGTGGCTGGCGACTTCACGGCTGGTGACGTCATGACGAGCGAGGTGATTGAGGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATCCCACCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026857_MULTIEX1-3/6=C1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.028
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGCCAGCCTCCTTCTC
R:
CTCTGCAGAAACTTCCGGGAG
Band lengths:
256-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types