RnoEX0061328 @ rn6
Exon Skipping
Gene
ENSRNOG00000024809 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:RGD Symbol;Acc:1306582]
Coordinates
chr3:9642317-9656039:+
Coord C1 exon
chr3:9642317-9642775
Coord A exon
chr3:9650321-9651102
Coord C2 exon
chr3:9655844-9656039
Length
782 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTCACTCTTTTTAGGAT
3' ss Score
12.63
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GGTGGAAAACTCTCATAATGCTGTTTTTTAAGAATCGAGCCTTGTGGCCTGTGGTGGCACGTGCCTGTAACCCCAGCAACCGCGTCGTTGTTGCAGAAGGATCCAGAAGTTTACCGCCAGCACTCAGTCGGACTTTTAAAAGAGCTACACCCTCAAGTGAGCTGGTACACGTACTTAGTACCGGAGATACCAGCTGTGGATTCTTCATCGTCAAGTCCAGAAGGGCTTTGCGCATAGGCAAAAAACTGGGTTAGGAACCCGCAGGAAAAGGCGATCCGGCTTTGGAGGAGCTGGCCTGGGGGCGGGGTGAACTGGCCTTGGGGCATCAGCGAGGTAGGGATGGGGAGGGGTGAATTCACCATGGGGCGGGACCATCTGGTCGTGTGGTTGGGCGAGCTAGGCGTGGGGAGGGGCGAGTTAGTCATGCGGGGAGAAGATCTGGAGGTGCCGGGTGAGCAG
Seq A exon
GATTCGGAATTCCCCTGTTCTCTAGGATTAACCCCTTTTGAAGCTGTGCGCACTAGGACCCCATCTCTGCTGCCCGATATAAAAGCAGAAGTCGTTGCTGAATTTGATGAAAAGTTTCTTTCCTCCCTACAAGCCTCATTCCAGGTACAGTAATCATCAAAAGGCACCAAAAGGAGACATCGGAGCCTGGCTGGAAGGGACCATAGACTTTAATCCTGACCACATCAAGAACAGTCAAGGTCGACGAGGTCCCGGCCTGGATACACCATTCCTGGTTTTACCCATGTAAAACCTGTTGACCCACAGGCAGGCCCAGGCCACTACACACCCGAGGCCTGCACTGGACTATGGCGAGCTGCCACCCACCCACTAGACCCACTTAAGCTAAGAATTCAAAAACCCGCCTCACGAACCCTGCTGCTCGCCCTAAACAATGGCACACCTCGACTGGTCTCCAGAGGGCTCCATCTTCACACTGCTCTGCTTGGAGATCAGACTTCAGCAGACAAACCTTTAACAAGCTGTTACCACCAAATGGATACTTCCAGGCCCCGAGAGAACCCCAGGAGACTTAGAGGTGCAGACTTTGACATTGACTGGTTCCGGCAATACCACCTTTCCCATGTTTAACCTAGGCCTTTGCGCCCTGGCCGGATATGTATGGAAAGATCCGGGTTCAAGCTGTTTGTCATATCAGGAACTGCAGAGCGCTAGGCCAACTTGTGGGCAGGACTGCCAAGAACAGCGACTTGCAGCCATCCAGCTCTGTGGGACTTGCCGAG
Seq C2 exon
AGCAGTGGCTGGTGACTGTGCAGCTGGTGACGTCATGACAAGCGAGGTGATCGAAGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATTCCGCCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024809_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACACCCTCAAGTGAGCT
R:
TTGTCATGACGTCACCAGCTG
Band lengths:
358-1140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]