RnoALTD0020612-3/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000024809 | Ntmt1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:RGD Symbol;Acc:1306582]
Coordinates
chr3:9642372-9656039:+
Coord C1 exon
chr3:9642372-9642472
Coord A exon
chr3:9642473-9642649
Coord C2 exon
chr3:9655836-9656039
Length
177 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCTGCCTCTTCCGTGTTCAGGGG
3' ss Score
11.55
Exon sequences
Seq C1 exon
GGCACGTGCCTGTAACCCCAGCAACCGCGTCGTTGTTGCAGAAGGATCCAGAAGTTTACCGCCAGCACTCAGTCGGACTTTTAAAAGAGCTACACCCTCAA
Seq A exon
GTGAGCTGGTACACGTACTTAGTACCGGAGATACCAGCTGTGGATTCTTCATCGTCAAGTCCAGAAGGGCTTTGCGCATAGGCAAAAAACTGGGTTAGGAACCCGCAGGAAAAGGCGATCCGGCTTTGGAGGAGCTGGCCTGGGGGCGGGGTGAACTGGCCTTGGGGCATCAGCGAG
Seq C2 exon
GGGAGCAGAGCAGTGGCTGGTGACTGTGCAGCTGGTGACGTCATGACAAGCGAGGTGATCGAAGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATTCCGCCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024809-1-9,2-9,3-9,4-9,5-9-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTTACCGCCAGCACTCAG
R:
CTCTGCAGAAACTTCCGGGAG
Band lengths:
244-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]