MmuEX0028741 @ mm10
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:105130447-105131633:+
Coord C1 exon
chr11:105130447-105130496
Coord A exon
chr11:105130929-105131065
Coord C2 exon
chr11:105131573-105131633
Length
137 bp
Sequences
Splice sites
3' ss Seq
CAAGACTTCTCCCACTTCAGATT
3' ss Score
5.8
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGGTTGTGGTGTAGGAAACACAGTCTTTCCAATTTTACAAACTAACAA
Seq A exon
ATTCTAGCTGCAAACACAGGTCCCCCATACTTGTGATGTGCTGTAAGCCGGGAGAGTCTTCAGTCCCCTCCTGGTTTTGGCTGGTTTTACTGTTCATCATGAGCGGTATTGTAAGGACACAGAGAGCAAGCATCCAG
Seq C2 exon
TAACCCAAACCTCTTCGTTTACTGTTGTGACTTTTCTGCCACGGCTATTGAACTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=FE(15.4=100)
A:
NO
C2:
PF134891=Methyltransf_23=FE(10.7=100)
Main Inclusion Isoform:
ENSMUST00000021030fB2446
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTTGTGGTGTAGGAAACA
R:
TGAGCAGTTCAATAGCCGTGG
Band lengths:
109-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types