MmuEX0028741 @ mm9
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:104991761-104992947:+
Coord C1 exon
chr11:104991761-104991810
Coord A exon
chr11:104992243-104992379
Coord C2 exon
chr11:104992887-104992947
Length
137 bp
Sequences
Splice sites
3' ss Seq
CAAGACTTCTCCCACTTCAGATT
3' ss Score
5.8
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGGTTGTGGTGTAGGAAACACAGTCTTTCCAATTTTACAAACTAACAA
Seq A exon
ATTCTAGCTGCAAACACAGGTCCCCCATACTTGTGATGTGCTGTAAGCCGGGAGAGTCTTCAGTCCCCTCCTGGTTTTGGCTGGTTTTACTGTTCATCATGAGCGGTATTGTAAGGACACAGAGAGCAAGCATCCAG
Seq C2 exon
TAACCCAAACCTCTTCGTTTACTGTTGTGACTTTTCTGCCACGGCTATTGAACTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(8.6=100)
A:
NO
C2:
PF134891=Methyltransf_23=FE(10.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTTGTGGTGTAGGAAACA
R:
TGAGCAGTTCAATAGCCGTGG
Band lengths:
109-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: