MmuEX0028766 @ mm10
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:71047140-71055583:-
Coord C1 exon
chr2:71055371-71055583
Coord A exon
chr2:71051672-71051733
Coord C2 exon
chr2:71047140-71047240
Length
62 bp
Sequences
Splice sites
3' ss Seq
AAGCTCTTCTGTTCTTACAGAAT
3' ss Score
7.26
5' ss Seq
CATGTGAGG
5' ss Score
5.25
Exon sequences
Seq C1 exon
GTGGGTCGGGTAGCCTTCCGGGCTGCACGCGGTAAACCTGGATAGCTTTGGTGGGTGCTGTGCAGCCACCTGGTGGTGTCGCTTCACCTGTGTGTCCCAGGAAGCAGTCCCTTTCTGCCCTGGTCGTGGGACGACTGCCAACCCCTCCTTTGGCCCTGCAAGGCTCTGGCCACGCGTCCAGAGGGGCGTTGTGGCCAGTGGGACCCTCCAAAG
Seq A exon
AATCATAACGGTTTTAAATATGGAAAACATCTTTGTATTTTCCTGCCATCAAGCCTCAGCAT
Seq C2 exon
TTAAAGTTAAAAGACAGGAAAAACCTCAAGTGCAGCTGGTAGCAGCAGAGAAACCTCAAGACACACCAACAGGATGGGGTCAAAATTGGCAGATGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975-'1-2,'1-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCTTTCTGCCCTGGTC
R:
ACCAGCTGCACTTGAGGTTTT
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types