MmuEX0028766 @ mm9
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70856277-70893640:-
Coord C1 exon
chr2:70893428-70893640
Coord A exon
chr2:70889729-70889790
Coord C2 exon
chr2:70856277-70856431
Length
62 bp
Sequences
Splice sites
3' ss Seq
AAGCTCTTCTGTTCTTACAGAAT
3' ss Score
7.26
5' ss Seq
CATGTGAGG
5' ss Score
5.25
Exon sequences
Seq C1 exon
GTGGGTCGGGTAGCCTTCCGGGCTGCACGCGGTAAACCTGGATAGCTTTGGTGGGTGCTGTGCAGCCACCTGGTGGTGTCGCTTCACCTGTGTGTCCCAGGAAGCAGTCCCTTTCTGCCCTGGTCGTGGGACGACTGCCAACCCCTCCTTTGGCCCTGCAAGGCTCTGGCCACGCGTCCAGAGGGGCGTTGTGGCCAGTGGGACCCTCCAAAG
Seq A exon
AATCATAACGGTTTTAAATATGGAAAACATCTTTGTATTTTCCTGCCATCAAGCCTCAGCAT
Seq C2 exon
GTCCTGCTTAGGATGAATGTGATTTGGAGAAGTTGCATTTGCCGACTGAGGCAGGGGAAGGTACCACACCGATGCCAGAGTGGCGTCCACCCGGTAGCCCCTCTGGGGTCGAGGATTTTAACTGACCCCGCCAAAGTTTTTGAACACAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCCAACCCCTCCTTTG
R:
CCTCAGTCGGCAAATGCAACT
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: