MmuEX0029220 @ mm9
Exon Skipping
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:17992752-18023139:+
Coord C1 exon
chr2:17992752-17992831
Coord A exon
chr2:18013795-18013941
Coord C2 exon
chr2:18023085-18023139
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTCTCTCTCTCCAGCTC
3' ss Score
12.68
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
CTTGCTATGGCATTGTTCAAGTACCTACTGGACCGTGGTTTTGTAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG
Seq A exon
CTCTCTACTCAGTGCTGGTCTCCCTTGTGAGCTCTAGCCACCTTGGCTTCCTTGGACTCCCAGCTCCATTTCCTCAACTTGGGGAGACCACAGGCCCTGTCTGGGTTCCTCCTCCTTGTTCCTCGGCCTGAAAACTCTCCCAAGGCA
Seq C2 exon
AGATGTGAGCTGTGTCCCCATAAAGATGGAGCTTTAAAAAGAACAGATAATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743_MULTIEX1-2/18=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
A:
NO
C2:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATGGCATTGTTCAAGTACCT
R:
CCCCATTATCTGTTCTTTTTAAAGCT
Band lengths:
133-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types