MmuEX0029883 @ mm9
Exon Skipping
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:84203791-84223055:+
Coord C1 exon
chr17:84203791-84203937
Coord A exon
chr17:84217702-84217892
Coord C2 exon
chr17:84219520-84223055
Length
191 bp
Sequences
Splice sites
3' ss Seq
ACTCACCATCTGCTTTCCAGCCT
3' ss Score
5.69
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGATCCATCCCGCAAAGAAACCTAATGTAATTCGGTCTCCACCAAGCCTGCAAACTCCAGCTACCAAGAGGATGCTCGCCGCTCCGAATCACACATCTCTGAGCATTCTGGGGAAAAGAAACTACAGCCATCACAATGGTCTAGATG
Seq A exon
CCTCCAAGATTCGGATGGTGAATTCTCTGATTTTCGGAAGGGGAGGACATGAACTCAGAAGCCTGCAACTAGAAACTGTAAAAGAGATTGCTTTTGTGGCGCCGGTTGATCAGAGGGCAGAGTCTCCAAGTCCACGGGCTTCAAGTACTTCTGAGTAGTCAAACAATAGGGAACATTTTGCAGAAAACAAA
Seq C2 exon
AACTTACCTGCTGTGTGTCAGACTGAGCTATCCCTACTCCATCCTGTACTCCAACATCTGCTACTGTCCTGCTGGTGGTCACAGCCATGCCTGGAAAGGAGGTGGCCCCCTTCAGTGGGAGGGCTCCGTGTGCACCCCTTGCAAGCCCAGAAGGGGGCAGGGAAGAAACTGTAGGAGCACACAGTCTGGATCTGTGACTCCATGTGTGACCAGTGGCACCTAGCTTCCTTCCCGGAGACCTTGCTGTTCCAGAGTGGACCTGTCTACGAGCTGAGGCAGGGGAGGACTTTCAACCTCCTGGCTTCCCAGTGCCCAATTCCTAGATGCAGTTGGCTCAGCCGTGAGGCTGCTGAGAGCCCAGAGCCCCAATGCCCTGCATGTGTGCACCCTCTTGTTTCATGCTGTGAAATTATGTACAGGAGAGACACGGCATCTTTCTGAGCGGCTTCTCCTTCAGAATAGGCCAGTGTTTCTGCCGTTCATCGTAGTTCCCTGCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.976 A=0.981 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTCCGAATCACACATCTC
R:
CTACAGTTTCTTCCCTGCCCC
Band lengths:
243-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: