MmuEX0029883 @ mm10
Exon Skipping
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83804451-83821516:+
Coord C1 exon
chr17:83804451-83804597
Coord A exon
chr17:83818362-83818552
Coord C2 exon
chr17:83820180-83821516
Length
191 bp
Sequences
Splice sites
3' ss Seq
ACTCACCATCTGCTTTCCAGCCT
3' ss Score
5.69
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGATCCATCCCGCAAAGAAACCTAATGTAATTCGGTCTCCACCAAGCCTGCAAACTCCAGCTACCAAGAGGATGCTCGCCGCTCCGAATCACACATCTCTGAGCATTCTGGGGAAAAGAAACTACAGCCATCACAATGGTCTAGATG
Seq A exon
CCTCCAAGATTCGGATGGTGAATTCTCTGATTTTCGGAAGGGGAGGACATGAACTCAGAAGCCTGCAACTAGAAACTGTAAAAGAGATTGCTTTTGTGGCGCCGGTTGATCAGAGGGCAGAGTCTCCAAGTCCACGGGCTTCAAGTACTTCTGAGTAGTCAAACAATAGGGAACATTTTGCAGAAAACAAA
Seq C2 exon
AACTTACCTGCTGTGTGTCAGACTGAGCTATCCCTACTCCATCCTGTACTCCAACATCTGCTACTGTCCTGCTGGTGGTCACAGCCATGCCTGGAAAGGAGGTGGCCCCCTTCAGTGGGAGGGCTCCGTGTGCACCCCTTGCAAGCCCAGAAGGGGGCAGGGAAGAAACTGTAGGAGCACACAGTCTGGATCTGTGACTCCATGTGTGACCAGTGGCACCTAGCTTCCTTCCCGGAGACCTTGCTGTTCCAGAGTGGACCTGTCTACGAGCTGAGGCAGGGGAGGACTTTCAACCTCCTGGCTTCCCAGTGCCCAATTCCTAGATGCAGTTGGCTCAGCCGTGAGGCTGCTGAGAGCCCAGAGCCCCAATGCCCTGCATGTGTGCACCCTCTTGTTTCATGCTGTGAAATTATGTACAGGAGAGACACGGCATCTTTCTGAGCGGCTTCTCCTTCAGAATAGGCCAGTGTTTCTGCCGTTCATCGTAGTTCCCTGCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (disopred):
C1=0.892 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTCCGAATCACACATCTC
R:
CTACAGTTTCTTCCCTGCCCC
Band lengths:
243-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types