RnoEX0056176 @ rn6
Exon Skipping
Gene
ENSRNOG00000004685 | Mta3
Description
metastasis associated 1 family, member 3 [Source:RGD Symbol;Acc:1306803]
Coordinates
chr6:7017140-7037178:+
Coord C1 exon
chr6:7017140-7017286
Coord A exon
chr6:7031671-7031862
Coord C2 exon
chr6:7033480-7037178
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACTCACCATCTGCTTTCCAGCCT
3' ss Score
5.69
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGATCCATCCTGCAAAGAAACCTAATGTAATTCGATCTCCGCCGAGCCTGCAAACTCCAACTACCAAGAGGATGCTCACCACTCCAAACCACACGTCCCTGAGCATTCTGGGAAAAAGAAACTACAGCCATCACAACGGTCTAGATG
Seq A exon
CCTCCAAGATTCGGATGGCGAATTCTCTGATTTTCGGAAGGGGAGGACATGAACTCAGAAGCCTGCAACTAGAAACTGTAAAAGAGATTGCTTTTGTGTCACCGGTTGATCAGAGGGCAGAGTCTCCAAGTCCACGGGCTTCAAGTACTTCTGAGTAGTCAAACCAATAGGGAACATTTTGCAGAAAACAAA
Seq C2 exon
AACTTACCTGCTGTGTGTCAGACTGAGCTATTCCTATTCCATCGTGTACTTCAAGACCTGCTACTGTCCCGCCGGTGGTCACAGCCATGCCTGGAAAGGAGGCGGCCCCTAGAGTGGGAGAGCTCCGTGTACACCCCTTGGAAGCCCAAAGGGGCAGGGAAGAAACTGTAGGAGCACACGGTCTGGGTCTGTGACTCTATGTGTGACCAGTGGCGCCTCACCTCCTTCCCAGAAACCTTGCTCTTCCAGAGTGGACCTGTCTGTGAACTGAGGCAGGGAGCTTCTAGCCTCCTGGCCTCCCAGTTCCCAGTCCCTAGATGCAGCCGGCTCAGCCATGGAGGCCGCTGAGAGCCCGGAGCCCCACTGCATGTGTCCACCCTACTGTTTCACGCTGTGACGTTATGTACAGGAGAGACACGGCATCTTTCTGAGTCGATTCTCCTTCAGAACGTGCCAGTGTTTCTGCAGCTCGTAATATTCCCTGCCCTCGCTATTGTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004685_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSRNOT00000079095fB9057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGAGGATGCTCACCACT
R:
TACAGTTTCTTCCCTGCCCCT
Band lengths:
255-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]