MmuEX0030106 @ mm10
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40608894-40634776:-
Coord C1 exon
chr8:40634698-40634776
Coord A exon
chr8:40626019-40626137
Coord C2 exon
chr8:40608894-40609016
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTCTTCATATTGCAGTTT
3' ss Score
8.68
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GCGCGCAGGTGCGTGAGGCCGCGCCCGCCGGGGACCCTGCAGACGCGGGCCCGCCATGGAGCACATCCGCACGCCCAAG
Seq A exon
TTTGATTTTCCCCAAAAGAACCGGCTGCAGCATTGTATGTCCTGATGTTTGCCTGATGTTTGTGACGGCTTCAGAGGAGAGGAGATACTCCATGTGGTCTCTCACACTTCAGAGGCAAG
Seq C2 exon
GTTGAAAACGTGCGCTTGGTAGACAGAGTGTCTTGTAAAAAGGCAGCGCTGGGAACTTTGTATCTGACGGCCACTCACGTCATATTCGTGGAAAATGCACCTGACACAAGAAAAGAAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.271 A=0.929 C2=0.000
Domain overlap (PFAM):
C1:
PF0289315=GRAM=PU(1.8=12.5)
A:
NA
C2:
PF0289315=GRAM=FE(71.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCATGGAGCACATC
R:
TCTTTTCTTGTGTCAGGTGCA
Band lengths:
146-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types